SEPIRA
This package is deprecated. It will probably be removed from Bioconductor. Please refer to the package end-of-life guidelines for more information.
This package is for version 3.18 of Bioconductor. This package has been removed from Bioconductor. For the last stable, up-to-date release version, see SEPIRA.
Systems EPigenomics Inference of Regulatory Activity
Bioconductor version: 3.18
SEPIRA (Systems EPigenomics Inference of Regulatory Activity) is an algorithm that infers sample-specific transcription factor activity from the genome-wide expression or DNA methylation profile of the sample.
Author: Yuting Chen [aut, cre], Andrew Teschendorff [aut]
Maintainer: Yuting Chen <cytwarmmay at hotmail.com>
citation("SEPIRA")):
Installation
To install this package, start R (version "4.3") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("SEPIRA")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("SEPIRA")| Introduction to `SEPIRA` | HTML | R Script |
| Reference Manual | ||
| NEWS | Text |
Details
| biocViews | GeneExpression, GeneRegulation, GeneTarget, Network, NetworkInference, Software, Transcription |
| Version | 1.22.0 |
| In Bioconductor since | BioC 3.7 (R-3.5) (6 years) |
| License | GPL-3 |
| Depends | R (>= 3.5.0) |
| Imports | limma(>= 3.32.5), corpcor (>= 1.6.9), parallel (>= 3.3.1), stats |
| System Requirements | |
| URL |
See More
| Suggests | knitr, rmarkdown, testthat, igraph |
| Linking To | |
| Enhances | |
| Depends On Me | |
| Imports Me | |
| Suggests Me | |
| Links To Me | |
| Build Report | Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Source Package | SEPIRA_1.22.0.tar.gz |
| Windows Binary | SEPIRA_1.22.0.zip |
| macOS Binary (x86_64) | SEPIRA_1.22.0.tgz |
| macOS Binary (arm64) | SEPIRA_1.22.0.tgz |
| Source Repository | git clone https://git.bioconductor.org/packages/SEPIRA |
| Source Repository (Developer Access) | git clone [email protected]:packages/SEPIRA |
| Package Short Url | https://bioconductor.org/packages/SEPIRA/ |
| Package Downloads Report | Download Stats |