bigPint
This package is deprecated. It will probably be removed from Bioconductor. Please refer to the package end-of-life guidelines for more information.
This package is for version 3.18 of Bioconductor. This package has been removed from Bioconductor. For the last stable, up-to-date release version, see bigPint.
BIG multivariate data Plotted INTeractively
Bioconductor version: 3.18
Make big data pint-sized. Methods for visualizing large multivariate datasets using static and interactive scatterplot matrices, parallel coordinate plots, volcano plots, and litre plots. Includes examples for visualizing RNA-sequencing datasets and differentially expressed genes.
Author: Lindsay Rutter [aut, cre], Dianne Cook [aut]
Maintainer: Lindsay Rutter <bigpintpackage at gmail.com>
citation("bigPint")):
Installation
To install this package, start R (version "4.3") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("bigPint")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
| Reference Manual |
Details
| biocViews | Software |
| Version | 1.18.1 |
| In Bioconductor since | BioC 3.9 (R-3.6) (5 years) |
| License | GPL-3 |
| Depends | R (>= 3.6.0) |
| Imports | DelayedArray(>= 0.12.2), dplyr (>= 0.7.2), GGally (>= 1.3.2), ggplot2 (>= 2.2.1), graphics (>= 3.5.0), grDevices (>= 3.5.0), grid (>= 3.5.0), gridExtra (>= 2.3), hexbin (>= 1.27.1), Hmisc (>= 4.0.3), htmlwidgets (>= 0.9), methods (>= 3.5.2), plotly (>= 4.7.1), plyr (>= 1.8.4), RColorBrewer (>= 1.1.2), reshape (>= 0.8.7), shiny (>= 1.0.5), shinycssloaders (>= 0.2.0), shinydashboard (>= 0.6.1), stats (>= 3.5.0), stringr (>= 1.3.1), SummarizedExperiment(>= 1.16.1), tidyr (>= 0.7.0), utils (>= 3.5.0) |
| System Requirements | |
| URL | https://github.com/lindsayrutter/bigPint |
| Bug Reports | https://github.com/lindsayrutter/bigPint/issues |
See More
| Suggests | BiocStyle(>= 3.18), BiocGenerics(>= 0.29.1), data.table (>= 1.11.8), EDASeq(>= 2.14.0), edgeR(>= 3.22.2), gtools (>= 3.5.0), knitr (>= 1.13), matrixStats (>= 0.53.1), rmarkdown (>= 1.10), roxygen2 (>= 3.0.0), RUnit (>= 0.4.32), tibble (>= 1.4.2) |
| Linking To | |
| Enhances | |
| Depends On Me | |
| Imports Me | |
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| Build Report | Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Source Package | |
| Windows Binary | |
| macOS Binary (x86_64) | |
| macOS Binary (arm64) | |
| Source Repository | git clone https://git.bioconductor.org/packages/bigPint |
| Source Repository (Developer Access) | git clone [email protected]:packages/bigPint |
| Package Short Url | https://bioconductor.org/packages/bigPint/ |
| Package Downloads Report | Download Stats |