matter
This package is for version 3.18 of Bioconductor; for the stable, up-to-date release version, see matter.
Out-of-memory dense and sparse signal arrays
Bioconductor version: 3.18
Memory-efficient file-based data structures for dense and sparse vectors, matrices, arrays, and lists with applications to nonuniformly sampled signals and spectra.
Author: Kylie A. Bemis <k.bemis at northeastern.edu>
Maintainer: Kylie A. Bemis <k.bemis at northeastern.edu>
citation("matter")):
Installation
To install this package, start R (version "4.3") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("matter")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("matter")| 1. Matter 2: User guide for flexible out-of-memory data structures | HTML | R Script |
| Reference Manual | ||
| NEWS | Text |
Details
| biocViews | DataImport, DataRepresentation, DimensionReduction, Infrastructure, Preprocessing, Software |
| Version | 2.4.1 |
| In Bioconductor since | BioC 3.4 (R-3.3) (7.5 years) |
| License | Artistic-2.0 |
| Depends | R (>= 4.0), BiocParallel, Matrix, methods |
| Imports | BiocGenerics, ProtGenerics, digest, irlba, biglm, stats, stats4, graphics, grDevices, utils |
| System Requirements | |
| URL | https://github.com/kuwisdelu/matter |
| Bug Reports | https://github.com/kuwisdelu/matter/issues |
See More
| Suggests | BiocStyle, knitr, testthat |
| Linking To | |
| Enhances | |
| Depends On Me | CardinalIO |
| Imports Me | Cardinal |
| Suggests Me | |
| Links To Me | |
| Build Report | Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Source Package | matter_2.4.1.tar.gz |
| Windows Binary | matter_2.4.1.zip (64-bit only) |
| macOS Binary (x86_64) | matter_2.4.1.tgz |
| macOS Binary (arm64) | matter_2.4.1.tgz |
| Source Repository | git clone https://git.bioconductor.org/packages/matter |
| Source Repository (Developer Access) | git clone [email protected]:packages/matter |
| Bioc Package Browser | https://code.bioconductor.org/browse/matter/ |
| Package Short Url | https://bioconductor.org/packages/matter/ |
| Package Downloads Report | Download Stats |
| Old Source Packages for BioC 3.18 | Source Archive |