qrqc
This package is deprecated. It will probably be removed from Bioconductor. Please refer to the package end-of-life guidelines for more information.
This package is for version 3.18 of Bioconductor. This package has been removed from Bioconductor. For the last stable, up-to-date release version, see qrqc.
Quick Read Quality Control
Bioconductor version: 3.18
Quickly scans reads and gathers statistics on base and quality frequencies, read length, k-mers by position, and frequent sequences. Produces graphical output of statistics for use in quality control pipelines, and an optional HTML quality report. S4 SequenceSummary objects allow specific tests and functionality to be written around the data collected.
Author: Vince Buffalo
Maintainer: Vince Buffalo <vsbuffalo at ucdavis.edu>
citation("qrqc")):
Installation
To install this package, start R (version "4.3") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("qrqc")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
| Reference Manual |
Details
| biocViews | DataImport, Preprocessing, QualityControl, Sequencing, Software, Visualization |
| Version | 1.56.0 |
| In Bioconductor since | BioC 2.8 (R-2.13) (13 years) |
| License | GPL (>=2) |
| Depends | reshape, ggplot2, Biostrings, biovizBase, brew, xtable, testthat |
| Imports | reshape, ggplot2, Biostrings, biovizBase, graphics, methods, plyr, stats |
| System Requirements | GNU make |
| URL | http://github.com/vsbuffalo/qrqc |
See More
| Suggests | |
| Linking To | Rhtslib(>= 1.15.3) |
| Enhances | |
| Depends On Me | |
| Imports Me | |
| Suggests Me | |
| Links To Me | |
| Build Report | Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Source Package | |
| Windows Binary | |
| macOS Binary (x86_64) | |
| macOS Binary (arm64) | |
| Source Repository | git clone https://git.bioconductor.org/packages/qrqc |
| Source Repository (Developer Access) | git clone [email protected]:packages/qrqc |
| Package Short Url | https://bioconductor.org/packages/qrqc/ |
| Package Downloads Report | Download Stats |