seqCNA
This package is deprecated. It will probably be removed from Bioconductor. Please refer to the package end-of-life guidelines for more information.
This package is for version 3.18 of Bioconductor. This package has been removed from Bioconductor. For the last stable, up-to-date release version, see seqCNA.annot.
Copy number analysis of high-throughput sequencing cancer data
Bioconductor version: 3.18
Copy number analysis of high-throughput sequencing cancer data with fast summarization, extensive filtering and improved normalization
Author: David Mosen-Ansorena
Maintainer: David Mosen-Ansorena <dmosen.gn at cicbiogune.es>
citation("seqCNA")):
Installation
To install this package, start R (version "4.3") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("seqCNA")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("seqCNA")| seqCNA.pdf | R Script | |
| Reference Manual |
Details
| biocViews | CopyNumberVariation, Genetics, Sequencing, Software |
| Version | 1.48.0 |
| In Bioconductor since | BioC 2.13 (R-3.0) (10.5 years) |
| License | GPL-3 |
| Depends | R (>= 3.0), GLAD(>= 2.14), doSNOW (>= 1.0.5), adehabitatLT (>= 0.3.4), seqCNA.annot(>= 0.99), methods |
| Imports | |
| System Requirements | samtools |
| URL |
See More
| Suggests | |
| Linking To | |
| Enhances | |
| Depends On Me | |
| Imports Me | |
| Suggests Me | Herper |
| Links To Me | |
| Build Report | Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Source Package | seqCNA_1.48.0.tar.gz |
| Windows Binary | seqCNA_1.48.0.zip |
| macOS Binary (x86_64) | seqCNA_1.48.0.tgz |
| macOS Binary (arm64) | seqCNA_1.48.0.tgz |
| Source Repository | git clone https://git.bioconductor.org/packages/seqCNA |
| Source Repository (Developer Access) | git clone [email protected]:packages/seqCNA |
| Package Short Url | https://bioconductor.org/packages/seqCNA/ |
| Package Downloads Report | Download Stats |