Create a new ggcyto plot from a GatingSet

# S3 method for GatingSet
ggcyto(data, mapping, subset = "_parent_", ...)

# S3 method for GatingSetList
ggcyto(data, ...)

# S3 method for GatingHierarchy
ggcyto(data, ...)

Arguments

data

GatingSet to plot

mapping

default list of aesthetic mappings (these can be colour, size, shape, line type -- see individual geom functions for more details)

subset

character that specifies the node path or node name in the GatingSet. Default is "_parent_", which will be substitute with the actual node name based on the geom_gate layer to be added later.

...

ignored

Value

a ggcyto_GatingSet object which is a subclass of ggcyto_flowSet class.

Examples

dataDir <- system.file("extdata",package="flowWorkspaceData") gs <- load_gs(list.files(dataDir, pattern = "gs_manual",full = TRUE)) # 2d plot ggcyto(gs, aes(x = CD4, y = CD8), subset = "CD3+") + geom_hex(bins = 64)
# 1d plot ggcyto(gs, aes(x = CD4), subset = "CD3+") + geom_density()