GSEABase
Gene set enrichment data structures and methods
Bioconductor version: Release (3.19)
This package provides classes and methods to support Gene Set Enrichment Analysis (GSEA).
Author: Martin Morgan [aut], Seth Falcon [aut], Robert Gentleman [aut], Paul Villafuerte [ctb] ('GSEABase' vignette translation from Sweave to Rmarkdown / HTML), Bioconductor Package Maintainer [cre]
Maintainer: Bioconductor Package Maintainer <maintainer at bioconductor.org>
citation("GSEABase")):
Installation
To install this package, start R (version "4.4") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("GSEABase")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("GSEABase")| An introduction to GSEABase | HTML | R Script |
| Reference Manual | ||
| NEWS | Text |
Details
| biocViews | GO, GeneExpression, GeneSetEnrichment, GraphAndNetwork, KEGG, Software |
| Version | 1.66.0 |
| In Bioconductor since | BioC 2.1 (R-2.6) (17 years) |
| License | Artistic-2.0 |
| Depends | R (>= 2.6.0), BiocGenerics(>= 0.13.8), Biobase(>= 2.17.8), annotate(>= 1.45.3), methods, graph(>= 1.37.2) |
| Imports | AnnotationDbi, XML |
| System Requirements | |
| URL |
See More
| Suggests | hgu95av2.db, GO.db, org.Hs.eg.db, Rgraphviz, ReportingTools, testthat, BiocStyle, knitr, RUnit |
| Linking To | |
| Enhances | |
| Depends On Me | AGDEX, BicARE, CCPROMISE, Cepo, PROMISE, TissueEnrich, cpvSNP, npGSEA, splineTimeR, GSVAdata, OSCA.basic |
| Imports Me | AUCell, BioCor, Category, EnrichmentBrowser, GSRI, GSVA, GlobalAncova, GmicR, PROMISE, PanomiR, RcisTarget, ReportingTools, TFutils, canceR, categoryCompare, cellHTS2, cosmosR, dreamlet, escape, gep2pep, mastR, miRSM, mogsa, oppar, phenoTest, scTGIF, signatureSearch, singleCellTK, singscore, slalom, sparrow, vissE, zenith, msigdb, SingscoreAMLMutations, clustermole, RVA |
| Suggests Me | BiocSet, GOstats, GSAR, MAST, gage, globaltest, phenoTest, BaseSet |
| Links To Me | |
| Build Report | Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Source Package | GSEABase_1.66.0.tar.gz |
| Windows Binary (x86_64) | GSEABase_1.66.0.zip (64-bit only) |
| macOS Binary (x86_64) | GSEABase_1.66.0.tgz |
| macOS Binary (arm64) | GSEABase_1.66.0.tgz |
| Source Repository | git clone https://git.bioconductor.org/packages/GSEABase |
| Source Repository (Developer Access) | git clone [email protected]:packages/GSEABase |
| Bioc Package Browser | https://code.bioconductor.org/browse/GSEABase/ |
| Package Short Url | https://bioconductor.org/packages/GSEABase/ |
| Package Downloads Report | Download Stats |