pathRender
Render molecular pathways
Bioconductor version: Release (3.19)
build graphs from pathway databases, render them by Rgraphviz.
Author: Li Long <lilong at isb-sib.ch>
Maintainer: Vince Carey <stvjc at channing.harvard.edu>
Citation (from within R, enter
citation("pathRender")):
Installation
To install this package, start R (version "4.4") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("pathRender")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("pathRender")| pathRender overview | R Script | |
| pathway graphs colored by expression map | R Script | |
| Reference Manual | ||
| NEWS | Text |
Details
| biocViews | GraphAndNetwork, Pathways, Software, Visualization |
| Version | 1.72.0 |
| In Bioconductor since | BioC 1.8 (R-2.3) (18.5 years) |
| License | LGPL |
| Depends | graph, Rgraphviz, RColorBrewer, cMAP, AnnotationDbi, methods, stats4 |
| Imports | |
| System Requirements | |
| URL | http://www.bioconductor.org |
See More
| Suggests | ALL, hgu95av2.db |
| Linking To | |
| Enhances | |
| Depends On Me | |
| Imports Me | |
| Suggests Me | |
| Links To Me | |
| Build Report | Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Source Package | pathRender_1.72.0.tar.gz |
| Windows Binary (x86_64) | pathRender_1.72.0.zip (64-bit only) |
| macOS Binary (x86_64) | pathRender_1.72.0.tgz |
| macOS Binary (arm64) | pathRender_1.72.0.tgz |
| Source Repository | git clone https://git.bioconductor.org/packages/pathRender |
| Source Repository (Developer Access) | git clone [email protected]:packages/pathRender |
| Bioc Package Browser | https://code.bioconductor.org/browse/pathRender/ |
| Package Short Url | https://bioconductor.org/packages/pathRender/ |
| Package Downloads Report | Download Stats |