mosaics-package	mosaics-package
.adapGridMosaicsZ0_IO	mosaics-internal
.adapGridMosaicsZ0_OS	mosaics-internal
.adapGridMosaicsZ0_TS	mosaics-internal
.calcModelBIC	mosaics-internal
.calcPN	mosaics-internal
.calMDZ1_2S	mosaics-internal
.computeStat	mosaics-internal
.emZ1_2S	mosaics-internal
.eStepZ1_2S	mosaics-internal
.exportBED	mosaics-internal
.exportGFF	mosaics-internal
.exportTXT	mosaics-internal
.getParamZ0	mosaics-internal
.getPH_1S	mosaics-internal
.getPH_2S	mosaics-internal
.getPi0	mosaics-internal
.margDistZ1_1S	mosaics-internal
.margDistZ1_2S	mosaics-internal
.margDist_1S	mosaics-internal
.margDist_2S	mosaics-internal
.mosaicsFit_IO	mosaics-internal
.mosaicsFit_OS	mosaics-internal
.mosaicsFit_TS	mosaics-internal
.mosaicsZ0_IO	mosaics-internal
.mosaicsZ0_OS	mosaics-internal
.mosaicsZ0_TS	mosaics-internal
.mosaicsZ1_1S	mosaics-internal
.mosaicsZ1_2S	mosaics-internal
.mStepZ1_2S	mosaics-internal
.peakCall	mosaics-internal
.plotGOF	mosaics-internal
.processBin_MGC	mosaics-internal
.processBin_MGCX	mosaics-internal
.processBin_X	mosaics-internal
.reportSummary	mosaics-internal
.rlmFit_IO	mosaics-internal
.rlmFit_OS	mosaics-internal
.rlmFit_TS	mosaics-internal
.validDataType	mosaics-internal
.validLocation	mosaics-internal
.validType	mosaics-internal
bdBin,MosaicsPeak-method	MosaicsPeak-class
BinData-class	BinData-class
chrID,BinData-method	BinData-class
constructBins	constructBins
conv_1S	mosaics-internal
conv_2S	mosaics-internal
coord,BinData-method	BinData-class
empFDR,MosaicsPeak-method	MosaicsPeak-class
estimates	estimates
estimates,MosaicsFit-method	estimates
estimates,MosaicsHMM-method	MosaicsHMM-class
export	export
export,MosaicsPeak-method	export
gcContent,BinData-method	BinData-class
generateWig	generateWig
input,BinData-method	BinData-class
mappability,BinData-method	BinData-class
mosaics	mosaics-package
mosaicsFit	mosaicsFit
mosaicsFit,BinData-method	mosaicsFit
MosaicsFit-class	MosaicsFit-class
mosaicsFitHMM	mosaicsFitHMM
mosaicsFitHMM,MosaicsFit-method	mosaicsFitHMM
MosaicsHMM-class	MosaicsHMM-class
mosaicsPeak	mosaicsPeak
mosaicsPeak,MosaicsFit-method	mosaicsPeak
MosaicsPeak-class	MosaicsPeak-class
mosaicsPeakHMM	mosaicsPeakHMM
mosaicsPeakHMM,MosaicsHMM-method	mosaicsPeakHMM
mosaicsRunAll	mosaicsRunAll
plot,BinData,missing-method	BinData-class
plot,MosaicsFit,ANY-method	MosaicsFit-class
plot,MosaicsHMM,missing-method	MosaicsHMM-class
print,BinData-method	BinData-class
print,MosaicsFit-method	MosaicsFit-class
print,MosaicsHMM-method	MosaicsHMM-class
print,MosaicsPeak-method	MosaicsPeak-class
readBins	readBins
show,BinData-method	BinData-class
show,MosaicsFit-method	MosaicsFit-class
show,MosaicsHMM-method	MosaicsHMM-class
show,MosaicsPeak-method	MosaicsPeak-class
tagCount,BinData-method	BinData-class
