Finds DAMEs - Differential Allelicly MEthylated regions
![[R logo]](../../../doc/html/Rlogo.svg)
![[Up]](../../../doc/html/left.jpg)
![[Top]](../../../doc/html/up.jpg)
Documentation for package ‘DAMEfinder’ version 1.18.0
Help Pages
| calc_asm | Calculate ASM Score |
| calc_derivedasm | Calculate SNP-based ASM |
| calc_logodds | Calculate the log odds ratio |
| calc_score | Calculate score |
| calc_weight | Calculate Weight for ASM Score |
| DAMEfinder | DAMEfinder: Method to detect allele-specific methylation (ASM), and differential ASM from Bisulfite sequencing data in R. |
| dame_track | Plot score tracks |
| dame_track_mean | Plot means per group of score tracks. |
| extractbams_output | extract_bams() output. |
| extract_bams | Detect allele-specific methylation from a bam file |
| find_dames | Find DAMEs |
| get_tstats | Get t-Statistics |
| methyl_circle_plot | Draw methylation circle plot |
| methyl_circle_plotCpG | Draw methylation circle plot without SNP |
| methyl_MDS_plot | Multidimensional scaling plot of distances between methylation proportions (beta values) |
| modulus_sqrt | Get Modulus Square Root |
| readtuples_output | read_tuples() output. |
| read_tuples | Read in list of methtuple files |