scMerge: Merging multiple batches of scRNA-seq data

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Documentation for package ‘scMerge’ version 1.22.0

• DESCRIPTION file.
• User guides, package vignettes and other documentation.
• Package NEWS.

Help Pages

example_sce	Subsetted mouse ESC 'SingleCellExperiment' object
fastRUVIII	A fast version of the ruv::RUVIII algorithm
getAdjustedMat	getAdjustedMat
ruvSimulate	Simulate a simple matrix or SingleCellExperiment to test internals of scMerge
sce_cbind	Combind several 'SingleCellExperiment' objects from different batches/experiments
scMerge	Perform the scMerge algorithm
scMerge2	Perform the scMerge2 algorithm
scMerge2h	Perform the scMerge2 (hierarchical) algorithm
scReplicate	Create replicate matrix for scMerge algorithm
scRUVg	RUVg function for single cell (under development)
scRUVIII	scRUVIII: RUVIII algorithm optimised for single cell data
scSEGIndex	Single Cell Stably Express Gene Index
segList	Stably expressed gene list in official gene symbols for both human and mouse
segList_ensemblGeneID	Stably expressed gene list in EnsemblGeneID for both human and mouse