A unified framework of realistic in silico data generation and statistical model inference for single-cell and spatial omics

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Documentation for package ‘scDesign3’ version 1.4.0

• DESCRIPTION file.
• User guides, package vignettes and other documentation.
• Package NEWS.

Help Pages

ba	Functions from gamlss/gamlss.add with bugs fixed
construct_data	Construct the input data (covaraite matrix and expression matrix)
example_sce	A SingelCellExperiment object containing both cell type and pseudotime
extract_para	Extract the parameters of each cell's distribution
fit_copula	Fit the copula model
fit_marginal	Fit the marginal models
ga	Functions from gamlss/gamlss.add with bugs fixed
gamlss.ba	Support for Function ba()
gamlss.ga	Support for Function ga()
perform_lrt	Perform the likelihood ratio test
plot_reduceddim	Dimensionality reduction and visualization
scdesign3	The wrapper for the whole scDesign3 pipeline
simu_new	Simulate new data
sparse_cov	This function computes the thresholding sparse covariance/correlation estimator with the optimal threshold level.