Function to get the features that are significant according to some thresholds from a DEGSet, DESeq2::DESeqResults and edgeR::topTags.
significants(object, ...) # S4 method for DEGSet significants(object, padj = 0.05, fc = 0, ...) # S4 method for DESeqResults significants(object, padj = 0.05, fc = 0, ...) # S4 method for TopTags significants(object, padj = 0.05, fc = 0, ...)
object | |
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... | Passed to deg. Default: value = NULL. Value can be 'raw', 'shrunken'. |
padj | Cutoff for the FDR column. |
fc | Cutoff for the log2FC column. |