Function to get the features that are significant according to some thresholds from a DEGSet, DESeq2::DESeqResults and edgeR::topTags.

significants(object, ...)

# S4 method for DEGSet
significants(object, padj = 0.05, fc = 0, ...)

# S4 method for DESeqResults
significants(object, padj = 0.05, fc = 0, ...)

# S4 method for TopTags
significants(object, padj = 0.05, fc = 0, ...)

Arguments

object

DEGSet

...

Passed to deg. Default: value = NULL. Value can be 'raw', 'shrunken'.

padj

Cutoff for the FDR column.

fc

Cutoff for the log2FC column.