MiRaGE

DOI: 10.18129/B9.bioc.MiRaGE    

This package is for version 3.7 of Bioconductor; for the stable, up-to-date release version, see MiRaGE.

MiRNA Ranking by Gene Expression

Bioconductor version: 3.7

The package contains functions for inferece of target gene regulation by miRNA, based on only target gene expression profile.

Author: Y-h. Taguchi <tag at granular.com>

Maintainer: Y-h. Taguchi <tag at granular.com>

Installation

To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("MiRaGE")

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("MiRaGE")

 

PDF	R Script	How to use MiRaGE Package
PDF		Reference Manual

Details

biocViews	GeneExpression, Microarray, RNASeq, SAGE, Sequencing, Software
Version	1.22.0
In Bioconductor since	BioC 2.11 (R-2.15) (6 years)
License	GPL
Depends	R (>= 3.1.0), Biobase(>= 2.23.3)
Imports	BiocGenerics, S4Vectors, AnnotationDbi
LinkingTo
Suggests	seqinr (>= 3.0.7), biomaRt(>= 2.19.1), GenomicFeatures(>= 1.15.4), Biostrings(>= 2.31.3), BSgenome.Hsapiens.UCSC.hg19, BSgenome.Mmusculus.UCSC.mm10, miRNATarget, humanStemCell, IRanges, GenomicRanges(>= 1.8.3), BSgenome, beadarrayExampleData
SystemRequirements
Enhances
URL
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	MiRaGE_1.22.0.tar.gz
Windows Binary	MiRaGE_1.22.0.zip
Mac OS X 10.11 (El Capitan)	MiRaGE_1.22.0.tgz
Source Repository	git clone https://git.bioconductor.org/packages/MiRaGE
Source Repository (Developer Access)	git clone [email protected]:packages/MiRaGE
Package Short Url	http://bioconductor.org/packages/MiRaGE/
Package Downloads Report	Download Stats