This package is for version 3.7 of Bioconductor; for the stable, up-to-date release version, see RnaSeqSampleSize.
Bioconductor version: 3.7
RnaSeqSampleSize package provides a sample size calculation method based on negative binomial model and the exact test for assessing differential expression analysis of RNA-seq data
Author: Shilin Zhao, Chung-I Li, Yan Guo, Quanhu Sheng, Yu Shyr
Maintainer: Shilin Zhao <zhaoshilin at gmail.com>
Citation (from within R,
enter citation("RnaSeqSampleSize")
):
To install this package, start R and enter:
## try http:// if https:// URLs are not supported source("https://bioconductor.org/biocLite.R") biocLite("RnaSeqSampleSize")
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("RnaSeqSampleSize")
R Script | RnaSeqSampleSize: Sample size estimation by real data | |
Reference Manual | ||
Text | NEWS |
biocViews | DifferentialExpression, ExperimentalDesign, GeneExpression, RNASeq, Sequencing, Software |
Version | 1.12.0 |
In Bioconductor since | BioC 3.1 (R-3.2) (3.5 years) |
License | GPL (>= 2) |
Depends | R (>= 2.10), RnaSeqSampleSizeData |
Imports | biomaRt, edgeR, heatmap3, matlab, KEGGREST, Rcpp (>= 0.11.2) |
LinkingTo | Rcpp |
Suggests | BiocStyle, knitr |
SystemRequirements | |
Enhances | |
URL | |
Depends On Me | |
Imports Me | |
Suggests Me | |
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Build Report |
Follow Installation instructions to use this package in your R session.
Source Package | RnaSeqSampleSize_1.12.0.tar.gz |
Windows Binary | RnaSeqSampleSize_1.12.0.zip (32- & 64-bit) |
Mac OS X 10.11 (El Capitan) | RnaSeqSampleSize_1.12.0.tgz |
Source Repository | git clone https://git.bioconductor.org/packages/RnaSeqSampleSize |
Source Repository (Developer Access) | git clone [email protected]:packages/RnaSeqSampleSize |
Package Short Url | http://bioconductor.org/packages/RnaSeqSampleSize/ |
Package Downloads Report | Download Stats |
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