iASeq

DOI: 10.18129/B9.bioc.iASeq    

This package is for version 3.7 of Bioconductor; for the stable, up-to-date release version, see iASeq.

iASeq: integrating multiple sequencing datasets for detecting allele-specific events

Bioconductor version: 3.7

It fits correlation motif model to multiple RNAseq or ChIPseq studies to improve detection of allele-specific events and describe correlation patterns across studies.

Author: Yingying Wei, Hongkai Ji

Maintainer: Yingying Wei <ywei at jhsph.edu>

Installation

To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("iASeq")

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("iASeq")

 

PDF	R Script	iASeq Vignette
PDF		Reference Manual

Details

biocViews	ChIPSeq, RNASeq, SNP, Software
Version	1.24.0
In Bioconductor since	BioC 2.10 (R-2.15) (6.5 years)
License	GPL-2
Depends	R (>= 2.14.1)
Imports	graphics, grDevices
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Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	iASeq_1.24.0.tar.gz
Windows Binary	iASeq_1.24.0.zip
Mac OS X 10.11 (El Capitan)	iASeq_1.24.0.tgz
Source Repository	git clone https://git.bioconductor.org/packages/iASeq
Source Repository (Developer Access)	git clone [email protected]:packages/iASeq
Package Short Url	http://bioconductor.org/packages/iASeq/
Package Downloads Report	Download Stats