iSeq

DOI: 10.18129/B9.bioc.iSeq    

This package is for version 3.7 of Bioconductor; for the stable, up-to-date release version, see iSeq.

Bayesian Hierarchical Modeling of ChIP-seq Data Through Hidden Ising Models

Bioconductor version: 3.7

This package uses Bayesian hidden Ising models to identify IP-enriched genomic regions from ChIP-seq data. It can be used to analyze ChIP-seq data with and without controls and replicates.

Author: Qianxing Mo

Maintainer: Qianxing Mo <qmo at bcm.edu>

Installation

To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("iSeq")

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("iSeq")

 

PDF	R Script	iSeq
PDF		Reference Manual
Text		NEWS

Details

biocViews	ChIPSeq, Sequencing, Software
Version	1.32.0
In Bioconductor since	BioC 2.7 (R-2.12) (8 years)
License	GPL (>= 2)
Depends	R (>= 2.10.0)
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Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	iSeq_1.32.0.tar.gz
Windows Binary	iSeq_1.32.0.zip (32- & 64-bit)
Mac OS X 10.11 (El Capitan)	iSeq_1.32.0.tgz
Source Repository	git clone https://git.bioconductor.org/packages/iSeq
Source Repository (Developer Access)	git clone [email protected]:packages/iSeq
Package Short Url	http://bioconductor.org/packages/iSeq/
Package Downloads Report	Download Stats