ChIPexoQualExample

DOI: 10.18129/B9.bioc.ChIPexoQualExample    

This package is for version 3.7 of Bioconductor; for the stable, up-to-date release version, see ChIPexoQualExample.

Example data for the ChIPexoQual package, which implements a quality control pipeline for ChIP-exo data

Bioconductor version: 3.7

Data for the ChIPexoQual package, consisting of (3) chromosome 1 aligned reads from a ChIP-exo experiment for FoxA1 in mouse liver cell lines aligned to the mm9 genome.

Author: Rene Welch, Dongjun Chung, Sunduz Keles

Maintainer: Rene Welch <welch at stat.wisc.edu>

Installation

To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("ChIPexoQualExample")

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("ChIPexoQualExample")

 

HTML	R Script	Vignette Title
PDF		Reference Manual
Text		NEWS

Details

biocViews	ExperimentData, Genome
Version	1.4.0
License	GPL (>= 2)
Depends	R (>= 3.3)
Imports
LinkingTo
Suggests
SystemRequirements
Enhances
URL	http://www.github.com/keleslab/ChIPexoQualExample
Depends On Me
Imports Me
Suggests Me	ChIPexoQual
Links To Me
Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	ChIPexoQualExample_1.4.0.tar.gz
Windows Binary
Mac OS X 10.11 (El Capitan)
Source Repository	git clone https://git.bioconductor.org/packages/ChIPexoQualExample
Source Repository (Developer Access)	git clone [email protected]:packages/ChIPexoQualExample
Package Short Url	http://bioconductor.org/packages/ChIPexoQualExample/
Package Downloads Report	Download Stats