This package is for version 3.8 of Bioconductor; for the stable, up-to-date release version, see BADER.
Bioconductor version: 3.8
For RNA sequencing count data, BADER fits a Bayesian hierarchical model. The algorithm returns the posterior probability of differential expression for each gene between two groups A and B. The joint posterior distribution of the variables in the model can be returned in the form of posterior samples, which can be used for further down-stream analyses such as gene set enrichment.
Author: Andreas Neudecker, Matthias Katzfuss
Maintainer: Andreas Neudecker <a.neudecker at arcor.de>
Citation (from within R,
enter citation("BADER")
):
To install this package, start R (version "3.5") and enter:
if (!requireNamespace("BiocManager", quietly = TRUE)) install.packages("BiocManager") BiocManager::install("BADER")
For older versions of R, please refer to the appropriate Bioconductor release.
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("BADER")
R Script | Analysing RNA-Seq data with the "BADER" package | |
Reference Manual |
biocViews | DifferentialExpression, ImmunoOncology, RNASeq, SAGE, Sequencing, Software |
Version | 1.20.1 |
In Bioconductor since | BioC 2.13 (R-3.0) (5.5 years) |
License | GPL-2 |
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Suggests | pasilla(>= 0.2.10) |
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Build Report |
Follow Installation instructions to use this package in your R session.
Source Package | BADER_1.20.1.tar.gz |
Windows Binary | BADER_1.20.1.zip (32- & 64-bit) |
Mac OS X 10.11 (El Capitan) | BADER_1.20.1.tgz |
Source Repository | git clone https://git.bioconductor.org/packages/BADER |
Source Repository (Developer Access) | git clone [email protected]:packages/BADER |
Package Short Url | http://bioconductor.org/packages/BADER/ |
Package Downloads Report | Download Stats |
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