FoldGO

DOI: 10.18129/B9.bioc.FoldGO    

This package is for version 3.8 of Bioconductor; for the stable, up-to-date release version, see FoldGO.

Package for Fold-specific GO Terms Recognition

Bioconductor version: 3.8

FoldGO is a package designed to annotate gene sets derived from expression experiments and identify fold-change-specific GO terms.

Author: Daniil Wiebe <daniil.wiebe at gmail.com> [aut, cre]

Maintainer: Daniil Wiebe <daniil.wiebe at gmail.com>

Installation

To install this package, start R (version "3.5") and enter:

if (!requireNamespace("BiocManager", quietly = TRUE))
    install.packages("BiocManager")
BiocManager::install("FoldGO")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("FoldGO")

 

HTML	R Script	FoldGO: a tool for fold-change-specific functional enrichment analysis
PDF		Reference Manual
Text		NEWS

Details

biocViews	DifferentialExpression, GO, GeneExpression, Software
Version	1.0.2
In Bioconductor since	BioC 3.8 (R-3.5) (0.5 years)
License	GPL-3
Depends	R (>= 3.5)
Imports	topGO(>= 2.30.1), ggplot2 (>= 2.2.1), tidyr (>= 0.8.0), stats, methods
LinkingTo
Suggests	knitr, rmarkdown, devtools, kableExtra
SystemRequirements
Enhances
URL
Depends On Me
Imports Me
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Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	FoldGO_1.0.2.tar.gz
Windows Binary	FoldGO_1.0.2.zip
Mac OS X 10.11 (El Capitan)	FoldGO_1.0.2.tgz
Source Repository	git clone https://git.bioconductor.org/packages/FoldGO
Source Repository (Developer Access)	git clone [email protected]:packages/FoldGO
Package Short Url	http://bioconductor.org/packages/FoldGO/
Package Downloads Report	Download Stats