This package is for version 3.8 of Bioconductor; for the stable, up-to-date release version, see GenomeGraphs.
Bioconductor version: 3.8
Genomic data analyses requires integrated visualization of known genomic information and new experimental data. GenomeGraphs uses the biomaRt package to perform live annotation queries to Ensembl and translates this to e.g. gene/transcript structures in viewports of the grid graphics package. This results in genomic information plotted together with your data. Another strength of GenomeGraphs is to plot different data types such as array CGH, gene expression, sequencing and other data, together in one plot using the same genome coordinate system.
Author: Steffen Durinck <sdurinck at gmail.com>, James Bullard <bullard at berkeley.edu>
Maintainer: Steffen Durinck <sdurinck at gmail.com>
Citation (from within R,
enter citation("GenomeGraphs")
):
To install this package, start R (version "3.5") and enter:
if (!requireNamespace("BiocManager", quietly = TRUE)) install.packages("BiocManager") BiocManager::install("GenomeGraphs")
For older versions of R, please refer to the appropriate Bioconductor release.
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("GenomeGraphs")
R Script | The GenomeGraphs users guide | |
Reference Manual | ||
Text | NEWS |
biocViews | Microarray, Software, Visualization |
Version | 1.42.0 |
In Bioconductor since | BioC 2.2 (R-2.7) (11 years) |
License | Artistic-2.0 |
Depends | R (>= 2.10), methods, biomaRt, grid |
Imports | |
LinkingTo | |
Suggests | |
SystemRequirements | |
Enhances | |
URL | |
Depends On Me | Genominator, waveTiling |
Imports Me | |
Suggests Me | leeBamViews, oligo, oligo, rMAT, triplex |
Links To Me | |
Build Report |
Follow Installation instructions to use this package in your R session.
Source Package | GenomeGraphs_1.42.0.tar.gz |
Windows Binary | GenomeGraphs_1.42.0.zip |
Mac OS X 10.11 (El Capitan) | GenomeGraphs_1.42.0.tgz |
Source Repository | git clone https://git.bioconductor.org/packages/GenomeGraphs |
Source Repository (Developer Access) | git clone [email protected]:packages/GenomeGraphs |
Package Short Url | http://bioconductor.org/packages/GenomeGraphs/ |
Package Downloads Report | Download Stats |
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