IVAS

DOI: 10.18129/B9.bioc.IVAS    

This package is for version 3.8 of Bioconductor; for the stable, up-to-date release version, see IVAS.

Identification of genetic Variants affecting Alternative Splicing

Bioconductor version: 3.8

Identification of genetic variants affecting alternative splicing.

Author: Seonggyun Han, Sangsoo Kim

Maintainer: Seonggyun Han <hangost at ssu.ac.kr>

Installation

To install this package, start R (version "3.5") and enter:

if (!requireNamespace("BiocManager", quietly = TRUE))
    install.packages("BiocManager")
BiocManager::install("IVAS")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("IVAS")

 

PDF	R Script	IVAS : Identification of genetic Variants affecting Alternative Splicing
PDF		Reference Manual
Text		NEWS

Details

biocViews	AlternativeSplicing, DifferentialExpression, DifferentialSplicing, GeneExpression, GeneRegulation, ImmunoOncology, RNASeq, Regression, SNP, Sequencing, Software, Transcription
Version	2.2.1
In Bioconductor since	BioC 3.1 (R-3.2) (4 years)
License	GPL-2
Depends	R (> 3.0.0), GenomicFeatures, ggplot2, Biobase
Imports	doParallel, lme4, BiocGenerics, GenomicRanges, IRanges, foreach, AnnotationDbi, S4Vectors, GenomeInfoDb, ggfortify, grDevices, methods, Matrix, BiocParallel, utils, stats
LinkingTo
Suggests	BiocStyle
SystemRequirements
Enhances
URL
Depends On Me	IMAS
Imports Me
Suggests Me
Links To Me
Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	IVAS_2.2.1.tar.gz
Windows Binary	IVAS_2.2.1.zip
Mac OS X 10.11 (El Capitan)	IVAS_2.2.1.tgz
Source Repository	git clone https://git.bioconductor.org/packages/IVAS
Source Repository (Developer Access)	git clone [email protected]:packages/IVAS
Package Short Url	http://bioconductor.org/packages/IVAS/
Package Downloads Report	Download Stats