IdeoViz

DOI: 10.18129/B9.bioc.IdeoViz    

This package is for version 3.8 of Bioconductor; for the stable, up-to-date release version, see IdeoViz.

Plots data (continuous/discrete) along chromosomal ideogram

Bioconductor version: 3.8

Plots data associated with arbitrary genomic intervals along chromosomal ideogram.

Author: Shraddha Pai <shraddha.pai at utoronto.ca>, Jingliang Ren

Maintainer: Shraddha Pai <shraddha.pai at utoronto.ca>

Installation

To install this package, start R (version "3.5") and enter:

if (!requireNamespace("BiocManager", quietly = TRUE))
    install.packages("BiocManager")
BiocManager::install("IdeoViz")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("IdeoViz")

 

PDF	R Script	IdeoViz: a package for plotting simple data along ideograms
PDF		Reference Manual
Text		NEWS
Text		LICENSE

Details

biocViews	Microarray, Software, Visualization
Version	1.18.0
In Bioconductor since	BioC 3.0 (R-3.1) (4.5 years)
License	GPL-2
Depends	Biobase, IRanges, GenomicRanges, RColorBrewer, rtracklayer, graphics, GenomeInfoDb
Imports
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Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	IdeoViz_1.18.0.tar.gz
Windows Binary	IdeoViz_1.18.0.zip
Mac OS X 10.11 (El Capitan)	IdeoViz_1.18.0.tgz
Source Repository	git clone https://git.bioconductor.org/packages/IdeoViz
Source Repository (Developer Access)	git clone [email protected]:packages/IdeoViz
Package Short Url	http://bioconductor.org/packages/IdeoViz/
Package Downloads Report	Download Stats