MPFE

DOI: 10.18129/B9.bioc.MPFE    

This package is for version 3.8 of Bioconductor; for the stable, up-to-date release version, see MPFE.

Estimation of the amplicon methylation pattern distribution from bisulphite sequencing data

Bioconductor version: 3.8

Estimate distribution of methylation patterns from a table of counts from a bisulphite sequencing experiment given a non-conversion rate and read error rate.

Author: Peijie Lin, Sylvain Foret, Conrad Burden

Maintainer: Conrad Burden <conrad.burden at anu.edu.au>

Installation

To install this package, start R (version "3.5") and enter:

if (!requireNamespace("BiocManager", quietly = TRUE))
    install.packages("BiocManager")
BiocManager::install("MPFE")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("MPFE")

 

PDF	R Script	MPFE
PDF		Reference Manual
Text		README

Details

biocViews	DNAMethylation, HighThroughputSequencingData, MethylSeq, Software
Version	1.18.0
In Bioconductor since	BioC 3.0 (R-3.1) (4.5 years)
License	GPL (>= 3)
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Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	MPFE_1.18.0.tar.gz
Windows Binary	MPFE_1.18.0.zip (32- & 64-bit)
Mac OS X 10.11 (El Capitan)	MPFE_1.18.0.tgz
Source Repository	git clone https://git.bioconductor.org/packages/MPFE
Source Repository (Developer Access)	git clone [email protected]:packages/MPFE
Package Short Url	http://bioconductor.org/packages/MPFE/
Package Downloads Report	Download Stats