RDAVIDWebService

DOI: 10.18129/B9.bioc.RDAVIDWebService    

This package is for version 3.8 of Bioconductor; for the stable, up-to-date release version, see RDAVIDWebService.

An R Package for retrieving data from DAVID into R objects using Web Services API.

Bioconductor version: 3.8

Tools for retrieving data from the Database for Annotation, Visualization and Integrated Discovery (DAVID) using Web Services into R objects. This package offers the main functionalities of DAVID website including: i) user friendly connectivity to upload gene/background list/s, change gene/background position, select current specie/s, select annotations, etc. ii) Reports of the submitted Gene List, Annotation Category Summary, Gene/Term Clusters, Functional Annotation Chart, Functional Annotation Table

Author: Cristobal Fresno and Elmer A. Fernandez

Maintainer: Cristobal Fresno <cfresno at bdmg.com.ar>

Installation

To install this package, start R (version "3.5") and enter:

if (!requireNamespace("BiocManager", quietly = TRUE))
    install.packages("BiocManager")
BiocManager::install("RDAVIDWebService")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("RDAVIDWebService")

 

PDF	R Script	RDAVIDWebService: a versatile R interface to DAVID
PDF		Reference Manual
Text		NEWS

Details

biocViews	DifferentialExpression, GraphAndNetwork, Software, Visualization
Version	1.20.0
In Bioconductor since	BioC 2.13 (R-3.0) (5.5 years)
License	GPL (>=2)
Depends	R (>= 2.14.1), methods, graph, GOstats, ggplot2
Imports	Category, GO.db, RBGL, rJava
LinkingTo
Suggests	Rgraphviz
SystemRequirements
Enhances
URL	http://www.bdmg.com.ar http://david.abcc.ncifcrf.gov/
Depends On Me	CompGO
Imports Me
Suggests Me	FGNet, IntramiRExploreR
Links To Me
Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	RDAVIDWebService_1.20.0.tar.gz
Windows Binary	RDAVIDWebService_1.20.0.zip
Mac OS X 10.11 (El Capitan)	RDAVIDWebService_1.20.0.tgz
Source Repository	git clone https://git.bioconductor.org/packages/RDAVIDWebService
Source Repository (Developer Access)	git clone [email protected]:packages/RDAVIDWebService
Package Short Url	http://bioconductor.org/packages/RDAVIDWebService/
Package Downloads Report	Download Stats