affyio

DOI: 10.18129/B9.bioc.affyio    

This package is for version 3.8 of Bioconductor; for the stable, up-to-date release version, see affyio.

Tools for parsing Affymetrix data files

Bioconductor version: 3.8

Routines for parsing Affymetrix data files based upon file format information. Primary focus is on accessing the CEL and CDF file formats.

Author: Ben Bolstad <bmb at bmbolstad.com>

Maintainer: Ben Bolstad <bmb at bmbolstad.com>

Installation

To install this package, start R (version "3.5") and enter:

if (!requireNamespace("BiocManager", quietly = TRUE))
    install.packages("BiocManager")
BiocManager::install("affyio")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

PDF		Reference Manual

Details

biocViews	DataImport, Infrastructure, Microarray, Software
Version	1.52.0
In Bioconductor since	BioC 1.8 (R-2.3) (13 years)
License	LGPL (>= 2)
Depends	R (>= 2.6.0)
Imports	zlibbioc, methods
LinkingTo
Suggests
SystemRequirements
Enhances
URL	https://github.com/bmbolstad/affyio
Depends On Me	affyPara, makecdfenv, SCAN.UPC, sscore
Imports Me	affy, affylmGUI, crlmm, ExiMiR, gcrma, oligo, oligoClasses, puma
Suggests Me	BufferedMatrixMethods
Links To Me
Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	affyio_1.52.0.tar.gz
Windows Binary	affyio_1.52.0.zip (32- & 64-bit)
Mac OS X 10.11 (El Capitan)	affyio_1.52.0.tgz
Source Repository	git clone https://git.bioconductor.org/packages/affyio
Source Repository (Developer Access)	git clone [email protected]:packages/affyio
Package Short Url	http://bioconductor.org/packages/affyio/
Package Downloads Report	Download Stats