cellity

DOI: 10.18129/B9.bioc.cellity    

This package is for version 3.8 of Bioconductor; for the stable, up-to-date release version, see cellity.

Quality Control for Single-Cell RNA-seq Data

Bioconductor version: 3.8

A support vector machine approach to identifying and filtering low quality cells from single-cell RNA-seq datasets.

Author: Tomislav Illicic, Davis McCarthy

Maintainer: Tomislav Ilicic <ti243 at cam.ac.uk>

Installation

To install this package, start R (version "3.5") and enter:

if (!requireNamespace("BiocManager", quietly = TRUE))
    install.packages("BiocManager")
BiocManager::install("cellity")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("cellity")

 

HTML	R Script	An introduction to the cellity package
PDF		Reference Manual
Text		NEWS

Details

biocViews	DimensionReduction, GeneExpression, ImmunoOncology, Normalization, Preprocessing, QualityControl, RNASeq, Sequencing, Software, SupportVectorMachine, Transcriptomics, Visualization
Version	1.10.1
In Bioconductor since	BioC 3.3 (R-3.3) (3 years)
License	GPL (>= 2)
Depends	R (>= 3.3)
Imports	AnnotationDbi, e1071, ggplot2, graphics, grDevices, grid, mvoutlier, org.Hs.eg.db, org.Mm.eg.db, robustbase, stats, topGO, utils
LinkingTo
Suggests	BiocStyle, caret, knitr, testthat, rmarkdown
SystemRequirements
Enhances
URL
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	cellity_1.10.1.tar.gz
Windows Binary	cellity_1.10.1.zip
Mac OS X 10.11 (El Capitan)	cellity_1.10.1.tgz
Source Repository	git clone https://git.bioconductor.org/packages/cellity
Source Repository (Developer Access)	git clone [email protected]:packages/cellity
Package Short Url	http://bioconductor.org/packages/cellity/
Package Downloads Report	Download Stats