mgsa

DOI: 10.18129/B9.bioc.mgsa    

This package is for version 3.8 of Bioconductor; for the stable, up-to-date release version, see mgsa.

Model-based gene set analysis

Bioconductor version: 3.8

Model-based Gene Set Analysis (MGSA) is a Bayesian modeling approach for gene set enrichment. The package mgsa implements MGSA and tools to use MGSA together with the Gene Ontology.

Author: Sebastian Bauer <mail at sebastianbauer.info>, Julien Gagneur <gagneur at genzentrum.lmu.de>

Maintainer: Sebastian Bauer <mail at sebastianbauer.info>

Installation

To install this package, start R (version "3.5") and enter:

if (!requireNamespace("BiocManager", quietly = TRUE))
    install.packages("BiocManager")
BiocManager::install("mgsa")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("mgsa")

 

PDF	R Script	Overview of the mgsa package.
PDF		Reference Manual

Details

biocViews	GO, GeneSetEnrichment, Pathways, Software
Version	1.30.0
In Bioconductor since	BioC 2.8 (R-2.13) (8 years)
License	Artistic-2.0
Depends	R (>= 2.14.0), methods, gplots
Imports	graphics, stats, utils
LinkingTo
Suggests	DBI, RSQLite, GO.db, testthat
SystemRequirements
Enhances
URL	https://github.com/sba1/mgsa-bioc
Depends On Me
Imports Me
Suggests Me	gCMAP
Links To Me
Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	mgsa_1.30.0.tar.gz
Windows Binary	mgsa_1.30.0.zip (32- & 64-bit)
Mac OS X 10.11 (El Capitan)	mgsa_1.30.0.tgz
Source Repository	git clone https://git.bioconductor.org/packages/mgsa
Source Repository (Developer Access)	git clone [email protected]:packages/mgsa
Package Short Url	http://bioconductor.org/packages/mgsa/
Package Downloads Report	Download Stats