miRLAB

DOI: 10.18129/B9.bioc.miRLAB    

This package is for version 3.8 of Bioconductor; for the stable, up-to-date release version, see miRLAB.

Dry lab for exploring miRNA-mRNA relationships

Bioconductor version: 3.8

Provide tools exploring miRNA-mRNA relationships, including popular miRNA target prediction methods, ensemble methods that integrate individual methods, functions to get data from online resources, functions to validate the results, and functions to conduct enrichment analyses.

Author: Thuc Duy Le, Junpeng Zhang, Mo Chen, Vu Viet Hoang Pham

Maintainer: Thuc Duy Le <Thuc.Le at unisa.edu.au>

Installation

To install this package, start R (version "3.5") and enter:

if (!requireNamespace("BiocManager", quietly = TRUE))
    install.packages("BiocManager")
BiocManager::install("miRLAB")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("miRLAB")

 

HTML	R Script	miRLAB
PDF		Reference Manual
Text		NEWS

Details

biocViews	GeneExpression, Network, NetworkInference, Software, miRNA
Version	1.12.0
In Bioconductor since	BioC 3.2 (R-3.2) (3.5 years)
License	GPL (>=2)
Depends
Imports	methods, stats, utils, RCurl, httr, stringr, Hmisc, energy, entropy, Roleswitch, gplots, glmnet, impute, limma, pcalg, TCGAbiolinks, dplyr, SummarizedExperiment, ctc, heatmap.plus, InvariantCausalPrediction, Category, GOstats, org.Hs.eg.db
LinkingTo
Suggests	knitr, BiocGenerics, AnnotationDbi, RUnit
SystemRequirements
Enhances
URL	https://github.com/pvvhoang/miRLAB
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	miRLAB_1.12.0.tar.gz
Windows Binary	miRLAB_1.12.0.zip
Mac OS X 10.11 (El Capitan)	miRLAB_1.12.0.tgz
Source Repository	git clone https://git.bioconductor.org/packages/miRLAB
Source Repository (Developer Access)	git clone [email protected]:packages/miRLAB
Package Short Url	http://bioconductor.org/packages/miRLAB/
Package Downloads Report	Download Stats