miRNAtap

DOI: 10.18129/B9.bioc.miRNAtap    

This package is for version 3.8 of Bioconductor; for the stable, up-to-date release version, see miRNAtap.

miRNAtap: microRNA Targets - Aggregated Predictions

Bioconductor version: 3.8

The package facilitates implementation of workflows requiring miRNA predictions, it allows to integrate ranked miRNA target predictions from multiple sources available online and aggregate them with various methods which improves quality of predictions above any of the single sources. Currently predictions are available for Homo sapiens, Mus musculus and Rattus norvegicus (the last one through homology translation).

Author: Maciej Pajak, T. Ian Simpson

Maintainer: Maciej Pajak <m.pajak at sms.ed.ac.uk>

Installation

To install this package, start R (version "3.5") and enter:

if (!requireNamespace("BiocManager", quietly = TRUE))
    install.packages("BiocManager")
BiocManager::install("miRNAtap")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("miRNAtap")

 

PDF	R Script	miRNAtap
PDF		Reference Manual
Text		NEWS

Details

biocViews	Classification, Microarray, Sequencing, Software, miRNA
Version	1.16.0
In Bioconductor since	BioC 3.0 (R-3.1) (4.5 years)
License	GPL-2
Depends	R (>= 3.3.0), AnnotationDbi
Imports	DBI, RSQLite, stringr, sqldf, plyr, methods
LinkingTo
Suggests	topGO, org.Hs.eg.db, miRNAtap.db, testthat
SystemRequirements
Enhances
URL
Depends On Me	miRNAtap.db
Imports Me	miRNAtap.db, SpidermiR
Suggests Me
Links To Me
Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	miRNAtap_1.16.0.tar.gz
Windows Binary	miRNAtap_1.16.0.zip
Mac OS X 10.11 (El Capitan)	miRNAtap_1.16.0.tgz
Source Repository	git clone https://git.bioconductor.org/packages/miRNAtap
Source Repository (Developer Access)	git clone [email protected]:packages/miRNAtap
Package Short Url	http://bioconductor.org/packages/miRNAtap/
Package Downloads Report	Download Stats