onlineFDR

DOI: 10.18129/B9.bioc.onlineFDR    

This package is for version 3.8 of Bioconductor; for the stable, up-to-date release version, see onlineFDR.

Online FDR control

Bioconductor version: 3.8

This package allows users to control the false discovery rate for online hypothesis testing, where hypotheses arrive sequentially in a stream, as presented by Javanmard and Montanari (2015, 2018). In this framework, a null hypothesis is rejected based only on the previous decisions, as the future p-values and the number of hypotheses to be tested are unknown.

Author: David Robertson [aut, cre], Adel Javanmard [aut], Andrea Montanari [aut], Natasha Karp [aut]

Maintainer: David Robertson <david.robertson at mrc-bsu.cam.ac.uk>

Installation

To install this package, start R (version "3.5") and enter:

if (!requireNamespace("BiocManager", quietly = TRUE))
    install.packages("BiocManager")
BiocManager::install("onlineFDR")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("onlineFDR")

 

HTML	R Script	Using the onlineFDR package
PDF		Reference Manual
Text		NEWS

Details

biocViews	MultipleComparison, Software, StatisticalMethod
Version	1.0.0
In Bioconductor since	BioC 3.8 (R-3.5) (0.5 years)
License	GPL-3
Depends
Imports	stats
LinkingTo
Suggests	knitr, rmarkdown, testthat
SystemRequirements
Enhances
URL
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	onlineFDR_1.0.0.tar.gz
Windows Binary	onlineFDR_1.0.0.zip
Mac OS X 10.11 (El Capitan)	onlineFDR_1.0.0.tgz
Source Repository	git clone https://git.bioconductor.org/packages/onlineFDR
Source Repository (Developer Access)	git clone [email protected]:packages/onlineFDR
Package Short Url	http://bioconductor.org/packages/onlineFDR/
Package Downloads Report	Download Stats