pRolocGUI

DOI: 10.18129/B9.bioc.pRolocGUI    

This package is for version 3.8 of Bioconductor; for the stable, up-to-date release version, see pRolocGUI.

Interactive visualisation of spatial proteomics data

Bioconductor version: 3.8

The package pRolocGUI comprises functions to interactively visualise organelle (spatial) proteomics data on the basis of pRoloc, pRolocdata and shiny.

Author: Lisa M Breckels, Thomas Naake and Laurent Gatto

Maintainer: Laurent Gatto <lg390 at cam.ac.uk>, Lisa M Breckels <lms79 at cam.ac.uk>

Installation

To install this package, start R (version "3.5") and enter:

if (!requireNamespace("BiocManager", quietly = TRUE))
    install.packages("BiocManager")
BiocManager::install("pRolocGUI")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("pRolocGUI")

 

HTML	R Script	pRolocGUI - Interactive visualisation of spatial proteomics data
PDF		Reference Manual
Video		pRoloc, pRolocdata and pRolocGUI

Details

biocViews	GUI, Proteomics, Software, Visualization
Version	1.16.0
In Bioconductor since	BioC 3.0 (R-3.1) (4.5 years)
License	GPL-2
Depends	methods, R (>= 3.1.0), pRoloc(>= 1.11.1), Biobase, MSnbase(>= 2.1.11)
Imports	shiny (>= 0.9.1), scales, dplyr, DT (>= 0.1.40), graphics, utils, ggplot2
LinkingTo
Suggests	pRolocdata, knitr, BiocStyle(>= 2.5.19), rmarkdown
SystemRequirements
Enhances
URL	http://ComputationalProteomicsUnit.github.io/pRolocGUI/
BugReports	https://github.com/ComputationalProteomicsUnit/pRolocGUI/issues
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	pRolocGUI_1.16.0.tar.gz
Windows Binary	pRolocGUI_1.16.0.zip (32- & 64-bit)
Mac OS X 10.11 (El Capitan)	pRolocGUI_1.16.0.tgz
Source Repository	git clone https://git.bioconductor.org/packages/pRolocGUI
Source Repository (Developer Access)	git clone [email protected]:packages/pRolocGUI
Package Short Url	http://bioconductor.org/packages/pRolocGUI/
Package Downloads Report	Download Stats