readat

DOI: 10.18129/B9.bioc.readat    

This package is for version 3.8 of Bioconductor; for the stable, up-to-date release version, see readat.

Functionality to Read and Manipulate SomaLogic ADAT files

Bioconductor version: 3.8

This package contains functionality to import, transform and annotate data from ADAT files generated by the SomaLogic SOMAscan platform.

Author: Richard Cotton [cre, aut], Aditya Bhagwat [aut]

Maintainer: Richard Cotton <richierocks at gmail.com>

Installation

To install this package, start R (version "3.5") and enter:

if (!requireNamespace("BiocManager", quietly = TRUE))
    install.packages("BiocManager")
BiocManager::install("readat")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("readat")

 

HTML	R Script	Introduction
PDF		Reference Manual
Text		NEWS

Details

biocViews	DataImport, GeneExpression, OneChannel, ProprietaryPlatforms, Proteomics, Software
Version	1.8.0
In Bioconductor since	BioC 3.4 (R-3.3) (2.5 years)
License	GPL-3
Depends	R (>= 3.4.0)
Imports	assertive.base (>= 0.0-7), assertive.files (>= 0.0-2), assertive.numbers (>= 0.0-2), assertive.properties (>= 0.0-4), assertive.sets (>= 0.0-3), assertive.types (>= 0.0-3), Biobase(>= 2.34.0), data.table (>= 1.10.4), dplyr (>= 0.5.0), magrittr (>= 1.5), openxlsx (>= 4.0.17), pathological (>= 0.1-2), reshape2 (>= 1.4.2), stats, stringi (>= 1.1.5), SummarizedExperiment(>= 1.4.0), testthat (>= 1.0.2), tidyr (>= 0.6.2), utils
LinkingTo
Suggests	knitr, MSnbase, rmarkdown, withr
SystemRequirements
Enhances
URL	https://bitbucket.org/graumannlabtools/readat
BugReports	https://bitbucket.org/graumannlabtools/readat/issues
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	readat_1.8.0.tar.gz
Windows Binary	readat_1.8.0.zip
Mac OS X 10.11 (El Capitan)	readat_1.8.0.tgz
Source Repository	git clone https://git.bioconductor.org/packages/readat
Source Repository (Developer Access)	git clone [email protected]:packages/readat
Package Short Url	http://bioconductor.org/packages/readat/
Package Downloads Report	Download Stats