runibic

DOI: 10.18129/B9.bioc.runibic    

This package is for version 3.8 of Bioconductor; for the stable, up-to-date release version, see runibic.

runibic: row-based biclustering algorithm for analysis of gene expression data in R

Bioconductor version: 3.8

This package implements UbiBic algorithm in R. This biclustering algorithm for analysis of gene expression data was introduced by Zhenjia Wang et al. in 2016. It is currently considered the most promising biclustering method for identification of meaningful structures in complex and noisy data.

Author: Patryk Orzechowski, Artur Pańszczyk

Maintainer: Patryk Orzechowski <patryk.orzechowski at gmail.com>

Installation

To install this package, start R (version "3.5") and enter:

if (!requireNamespace("BiocManager", quietly = TRUE))
    install.packages("BiocManager")
BiocManager::install("runibic")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("runibic")

 

HTML		runibic: UniBic in R Tutorial
PDF		Reference Manual
Text		NEWS
Text		LICENSE

Details

biocViews	Clustering, Coverage, GeneExpression, Microarray, Sequencing, Software
Version	1.4.0
In Bioconductor since	BioC 3.6 (R-3.4) (1.5 years)
License	MIT + file LICENSE
Depends	R (>= 3.4.0), biclust, SummarizedExperiment
Imports	Rcpp (>= 0.12.12), testthat, methods
LinkingTo	Rcpp
Suggests	knitr, rmarkdown, GEOquery, affy, airway, QUBIC
SystemRequirements	C++11, GNU make
Enhances
URL	http://github.com/athril/runibic
BugReports	http://github.com/athril/runibic/issues
Depends On Me
Imports Me	miRSM
Suggests Me
Links To Me
Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	runibic_1.4.0.tar.gz
Windows Binary	runibic_1.4.0.zip
Mac OS X 10.11 (El Capitan)	runibic_1.4.0.tgz
Source Repository	git clone https://git.bioconductor.org/packages/runibic
Source Repository (Developer Access)	git clone [email protected]:packages/runibic
Package Short Url	http://bioconductor.org/packages/runibic/
Package Downloads Report	Download Stats