sevenbridges

DOI: 10.18129/B9.bioc.sevenbridges    

This package is for version 3.8 of Bioconductor; for the stable, up-to-date release version, see sevenbridges.

Seven Bridges Platform API Client and Common Workflow Language Tool Builder in R

Bioconductor version: 3.8

R client and utilities for Seven Bridges platform API, from Cancer Genomics Cloud to other Seven Bridges supported platforms.

Author: Nan Xiao [aut, cre], Tengfei Yin [aut], Emile Young [ctb], Dusan Randjelovic [ctb], Seven Bridges Genomics [cph, fnd]

Maintainer: Nan Xiao <nan.xiao at sevenbridges.com>

Installation

To install this package, start R (version "3.5") and enter:

if (!requireNamespace("BiocManager", quietly = TRUE))
    install.packages("BiocManager")
BiocManager::install("sevenbridges")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("sevenbridges")

 

HTML	R Script	Complete Guide for Seven Bridges API R Client
HTML	R Script	Creating Your Docker Container and Command Line Interface (with docopt)
HTML	R Script	Describe and Execute CWL Tools/Workflows in R
HTML	R Script	Find Data on CGC via Data Browser and Datasets API
HTML	R Script	IDE Container: RStudio Server, Shiny Server, and More
HTML	R Script	Master Tutorial: Use R for Cancer Genomics Cloud
PDF		Reference Manual
Text		NEWS
Text		LICENSE

Details

biocViews	DataImport, Software, ThirdPartyClient
Version	1.12.5
In Bioconductor since	BioC 3.3 (R-3.3) (3 years)
License	Apache License 2.0 | file LICENSE
Depends	methods, utils, stats
Imports	httr, jsonlite, yaml, objectProperties, stringr, S4Vectors, docopt, curl, uuid, dplyr
LinkingTo
Suggests	knitr, rmarkdown, testthat, readr
SystemRequirements
Enhances
URL	https://www.sevenbridges.com https://sbg.github.io/sevenbridges-r/ https://github.com/sbg/sevenbridges-r
BugReports	https://github.com/sbg/sevenbridges-r/issues
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	sevenbridges_1.12.5.tar.gz
Windows Binary	sevenbridges_1.12.5.zip
Mac OS X 10.11 (El Capitan)	sevenbridges_1.12.5.tgz
Source Repository	git clone https://git.bioconductor.org/packages/sevenbridges
Source Repository (Developer Access)	git clone [email protected]:packages/sevenbridges
Package Short Url	http://bioconductor.org/packages/sevenbridges/
Package Downloads Report	Download Stats