This package is for version 3.8 of Bioconductor; for the stable, up-to-date release version, see singscore.
Bioconductor version: 3.8
A simple single-sample gene signature scoring method that uses rank-based statistics to analyze the sample's gene expression profile. It scores the expression activities of gene sets at a single-sample level.
Author: Momeneh Foroutan [aut, ctb], Dharmesh Bhuva [aut, ctb], Ruqian Lyu [aut, cre]
Maintainer: Ruqian Lyu <ruqianl at student.unimelb.edu.au>
Citation (from within R,
enter citation("singscore")
):
To install this package, start R (version "3.5") and enter:
if (!requireNamespace("BiocManager", quietly = TRUE)) install.packages("BiocManager") BiocManager::install("singscore")
For older versions of R, please refer to the appropriate Bioconductor release.
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("singscore")
HTML | R Script | singscore |
Reference Manual | ||
Text | NEWS |
biocViews | GO, GeneExpression, GeneSetEnrichment, GraphAndNetwork, KEGG, Software |
Version | 1.2.2 |
In Bioconductor since | BioC 3.7 (R-3.5) (1 year) |
License | GPL-3 |
Depends | R (>= 3.5), GSEABase |
Imports | methods, stats, graphics, ggplot2, ggsci, grDevices, ggrepel, plotly, tidyr, plyr, magrittr, reshape, edgeR, RColorBrewer, Biobase, BiocParallel, SummarizedExperiment, matrixStats |
LinkingTo | |
Suggests | knitr, rmarkdown, testthat |
SystemRequirements | |
Enhances | |
URL | https://github.com/DavisLaboratory/singscore |
BugReports | https://github.com/DavisLaboratory/singscore/issues |
Depends On Me | |
Imports Me | |
Suggests Me | |
Links To Me | |
Build Report |
Follow Installation instructions to use this package in your R session.
Source Package | singscore_1.2.2.tar.gz |
Windows Binary | singscore_1.2.2.zip |
Mac OS X 10.11 (El Capitan) | singscore_1.2.2.tgz |
Source Repository | git clone https://git.bioconductor.org/packages/singscore |
Source Repository (Developer Access) | git clone [email protected]:packages/singscore |
Package Short Url | http://bioconductor.org/packages/singscore/ |
Package Downloads Report | Download Stats |
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