xmapbridge

DOI: 10.18129/B9.bioc.xmapbridge    

This package is for version 3.8 of Bioconductor; for the stable, up-to-date release version, see xmapbridge.

Export plotting files to the xmapBridge for visualisation in X:Map

Bioconductor version: 3.8

xmapBridge can plot graphs in the X:Map genome browser. This package exports plotting files in a suitable format.

Author: Tim Yates <Tim.Yates at cruk.manchester.ac.uk> and Crispin J Miller <Crispin.Miller at cruk.manchester.ac.uk>

Maintainer: Chris Wirth <Christopher.Wirth at cruk.manchester.ac.uk>

Installation

To install this package, start R (version "3.5") and enter:

if (!requireNamespace("BiocManager", quietly = TRUE))
    install.packages("BiocManager")
BiocManager::install("xmapbridge")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("xmapbridge")

 

PDF	R Script	xmapbridge primer
PDF		Reference Manual

Details

biocViews	Annotation, ReportWriting, Software, Visualization
Version	1.40.0
In Bioconductor since	BioC 2.3 (R-2.8) (10.5 years)
License	LGPL-3
Depends	R (>= 2.0), methods
Imports
LinkingTo
Suggests	RUnit, RColorBrewer
SystemRequirements
Enhances
URL	http://xmap.picr.man.ac.uk http://www.bioconductor.org
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	xmapbridge_1.40.0.tar.gz
Windows Binary	xmapbridge_1.40.0.zip
Mac OS X 10.11 (El Capitan)	xmapbridge_1.40.0.tgz
Source Repository	git clone https://git.bioconductor.org/packages/xmapbridge
Source Repository (Developer Access)	git clone [email protected]:packages/xmapbridge
Package Short Url	http://bioconductor.org/packages/xmapbridge/
Package Downloads Report	Download Stats