COHCAPanno

DOI: 10.18129/B9.bioc.COHCAPanno    

This package is for version 3.8 of Bioconductor; for the stable, up-to-date release version, see COHCAPanno.

Annotations for City of Hope CpG Island Analysis Pipeline

Bioconductor version: 3.8

Provides genomic location, nearby CpG island and nearby gene information for common Illumina methylation array platforms

Author: Charles Warden

Maintainer: Charles Warden <cwarden45 at gmail.com>

Installation

To install this package, start R (version "3.5") and enter:

if (!requireNamespace("BiocManager", quietly = TRUE))
    install.packages("BiocManager")
BiocManager::install("COHCAPanno")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("COHCAPanno")

 

PDF	R Script	COHCAPanno Vignette
PDF		Reference Manual

Details

biocViews	ArrayExpress, CpGIslandData, ExperimentData, GEO, Homo_sapiens_Data, MethylationArrayData, MicroarrayData
Version	1.18.0
License	GPL-3
Depends	R (>= 2.10)
Imports
LinkingTo
Suggests
SystemRequirements
Enhances
URL
Depends On Me	COHCAP
Imports Me
Suggests Me
Links To Me
Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	COHCAPanno_1.18.0.tar.gz
Windows Binary
Mac OS X 10.11 (El Capitan)
Source Repository	git clone https://git.bioconductor.org/packages/COHCAPanno
Source Repository (Developer Access)	git clone [email protected]:packages/COHCAPanno
Package Short Url	http://bioconductor.org/packages/COHCAPanno/
Package Downloads Report	Download Stats