ACME

DOI: 10.18129/B9.bioc.ACME    

This package is for version 3.9 of Bioconductor; for the stable, up-to-date release version, see ACME.

Algorithms for Calculating Microarray Enrichment (ACME)

Bioconductor version: 3.9

ACME (Algorithms for Calculating Microarray Enrichment) is a set of tools for analysing tiling array ChIP/chip, DNAse hypersensitivity, or other experiments that result in regions of the genome showing "enrichment". It does not rely on a specific array technology (although the array should be a "tiling" array), is very general (can be applied in experiments resulting in regions of enrichment), and is very insensitive to array noise or normalization methods. It is also very fast and can be applied on whole-genome tiling array experiments quite easily with enough memory.

Author: Sean Davis <sdavis2 at mail.nih.gov>

Maintainer: Sean Davis <sdavis2 at mail.nih.gov>

Installation

To install this package, start R (version "3.6") and enter:

if (!requireNamespace("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("ACME")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("ACME")

 

PDF	R Script	ACME
PDF		Reference Manual

Details

biocViews	Microarray, Normalization, Software, Technology
Version	2.40.0
In Bioconductor since	BioC 2.0 (R-2.5) (12.5 years)
License	GPL (>= 2)
Depends	R (>= 2.10), Biobase(>= 2.5.5), methods, BiocGenerics
Imports	graphics, stats
LinkingTo
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URL	http://watson.nci.nih.gov/~sdavis
Depends On Me
Imports Me
Suggests Me	oligo
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Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	ACME_2.40.0.tar.gz
Windows Binary	ACME_2.40.0.zip (32- & 64-bit)
Mac OS X 10.11 (El Capitan)	ACME_2.40.0.tgz
Source Repository	git clone https://git.bioconductor.org/packages/ACME
Source Repository (Developer Access)	git clone [email protected]:packages/ACME
Package Short Url	https://bioconductor.org/packages/ACME/
Package Downloads Report	Download Stats