ClusterJudge

DOI: 10.18129/B9.bioc.ClusterJudge    

This package is for version 3.9 of Bioconductor; for the stable, up-to-date release version, see ClusterJudge.

Judging Quality of Clustering Methods using Mutual Information

Bioconductor version: 3.9

ClusterJudge implements the functions, examples and other software published as an algorithm by Gibbons, FD and Roth FP. The article is called "Judging the Quality of Gene Expression-Based Clustering Methods Using Gene Annotation" and it appeared in Genome Research, vol. 12, pp1574-1581 (2002). See package?ClusterJudge for an overview.

Author: Adrian Pasculescu

Maintainer: Adrian Pasculescu <pasculescu at lunenfeld.ca>

Installation

To install this package, start R (version "3.6") and enter:

if (!requireNamespace("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("ClusterJudge")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("ClusterJudge")

 

HTML	R Script	Vignette Title
PDF		Reference Manual
Text		NEWS

Details

biocViews	Clustering, GO, GeneExpression, Software, StatisticalMethod
Version	1.6.0
In Bioconductor since	BioC 3.6 (R-3.4) (2 years)
License	Artistic-2.0
Depends	R (>= 3.4), stats, utils, graphics, infotheo, lattice, latticeExtra, httr, jsonlite
Imports
LinkingTo
Suggests	yeastExpData, knitr, rmarkdown, devtools, testthat, biomaRt
SystemRequirements
Enhances
URL
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	ClusterJudge_1.6.0.tar.gz
Windows Binary	ClusterJudge_1.6.0.zip (32- & 64-bit)
Mac OS X 10.11 (El Capitan)	ClusterJudge_1.6.0.tgz
Source Repository	git clone https://git.bioconductor.org/packages/ClusterJudge
Source Repository (Developer Access)	git clone [email protected]:packages/ClusterJudge
Package Short Url	https://bioconductor.org/packages/ClusterJudge/
Package Downloads Report	Download Stats