ISoLDE

DOI: 10.18129/B9.bioc.ISoLDE    

This package is for version 3.9 of Bioconductor; for the stable, up-to-date release version, see ISoLDE.

Integrative Statistics of alleLe Dependent Expression

Bioconductor version: 3.9

This package provides ISoLDE a new method for identifying imprinted genes. This method is dedicated to data arising from RNA sequencing technologies. The ISoLDE package implements original statistical methodology described in the publication below.

Author: Christelle Reynès [aut, cre], Marine Rohmer [aut], Guilhem Kister [aut]

Maintainer: Christelle Reynès <christelle.reynes at igf.cnrs.fr>

Installation

To install this package, start R (version "3.6") and enter:

if (!requireNamespace("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("ISoLDE")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

PDF		Reference Manual
Text		README
Text		NEWS

Details

biocViews	Epigenetics, GeneExpression, GeneRegulation, GeneSetEnrichment, GeneticVariability, Genetics, ImmunoOncology, MathematicalBiology, MultipleComparison, RNASeq, SNP, Sequencing, Software, Transcription
Version	1.12.0
In Bioconductor since	BioC 3.3 (R-3.3) (3.5 years)
License	GPL (>= 2.0)
Depends	R (>= 3.3.0), graphics, grDevices, stats, utils
Imports
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URL	www.r-project.org
Depends On Me
Imports Me
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Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	ISoLDE_1.12.0.tar.gz
Windows Binary	ISoLDE_1.12.0.zip
Mac OS X 10.11 (El Capitan)	ISoLDE_1.12.0.tgz
Source Repository	git clone https://git.bioconductor.org/packages/ISoLDE
Source Repository (Developer Access)	git clone [email protected]:packages/ISoLDE
Package Short Url	https://bioconductor.org/packages/ISoLDE/
Package Downloads Report	Download Stats