SigFuge

DOI: 10.18129/B9.bioc.SigFuge    

This package is for version 3.9 of Bioconductor; for the stable, up-to-date release version, see SigFuge.

SigFuge

Bioconductor version: 3.9

Algorithm for testing significance of clustering in RNA-seq data.

Author: Patrick Kimes, Christopher Cabanski

Maintainer: Patrick Kimes <patrick.kimes at gmail.com>

Installation

To install this package, start R (version "3.6") and enter:

if (!requireNamespace("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("SigFuge")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("SigFuge")

 

PDF	R Script	SigFuge Tutorial
PDF		Reference Manual

Details

biocViews	Clustering, ImmunoOncology, RNASeq, Software, Visualization
Version	1.22.0
In Bioconductor since	BioC 2.13 (R-3.0) (6 years)
License	GPL-3
Depends	R (>= 3.1.1), GenomicRanges
Imports	ggplot2, matlab, reshape, sigclust
LinkingTo
Suggests	org.Hs.eg.db, prebsdata, Rsamtools(>= 1.17.0), TxDb.Hsapiens.UCSC.hg19.knownGene, BiocStyle
SystemRequirements
Enhances
URL
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	SigFuge_1.22.0.tar.gz
Windows Binary	SigFuge_1.22.0.zip
Mac OS X 10.11 (El Capitan)	SigFuge_1.22.0.tgz
Source Repository	git clone https://git.bioconductor.org/packages/SigFuge
Source Repository (Developer Access)	git clone [email protected]:packages/SigFuge
Package Short Url	https://bioconductor.org/packages/SigFuge/
Package Downloads Report	Download Stats