gQTLstats

DOI: 10.18129/B9.bioc.gQTLstats    

This package is for version 3.9 of Bioconductor; for the stable, up-to-date release version, see gQTLstats.

gQTLstats: computationally efficient analysis for eQTL and allied studies

Bioconductor version: 3.9

computationally efficient analysis of eQTL, mQTL, dsQTL, etc.

Author: VJ Carey <stvjc at channing.harvard.edu>

Maintainer: VJ Carey <stvjc at channing.harvard.edu>

Installation

To install this package, start R (version "3.6") and enter:

if (!requireNamespace("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("gQTLstats")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("gQTLstats")

 

HTML	R Script	gQTLstats: statistics for genetics of genomic features
PDF		Reference Manual
Text		NEWS

Details

biocViews	Software
Version	1.16.0
In Bioconductor since	BioC 3.1 (R-3.2) (4.5 years)
License	Artistic-2.0
Depends	R (>= 3.1.0), Homo.sapiens
Imports	methods, snpStats, BiocGenerics, S4Vectors(>= 0.9.25), IRanges, GenomeInfoDb, GenomicFiles, GenomicRanges, SummarizedExperiment, VariantAnnotation, Biobase, BatchJobs, gQTLBase, limma, mgcv, dplyr, AnnotationDbi, GenomicFeatures, ggplot2, reshape2, doParallel, foreach, ffbase, BBmisc, beeswarm, HardyWeinberg, graphics, stats, utils, shiny, plotly, erma, ggbeeswarm
LinkingTo
Suggests	geuvPack, geuvStore2, Rsamtools, knitr, rmarkdown, ggbio, BiocStyle, RUnit, multtest, gwascat, org.Hs.eg.db, TxDb.Hsapiens.UCSC.hg19.knownGene, ldblock
SystemRequirements
Enhances
URL
Depends On Me
Imports Me
Suggests Me	gwascat, ldblock, parglms, yriMulti
Links To Me
Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	gQTLstats_1.16.0.tar.gz
Windows Binary	gQTLstats_1.16.0.zip
Mac OS X 10.11 (El Capitan)	gQTLstats_1.16.0.tgz
Source Repository	git clone https://git.bioconductor.org/packages/gQTLstats
Source Repository (Developer Access)	git clone [email protected]:packages/gQTLstats
Package Short Url	https://bioconductor.org/packages/gQTLstats/
Package Downloads Report	Download Stats