interactiveDisplay

DOI: 10.18129/B9.bioc.interactiveDisplay    

This package is for version 3.9 of Bioconductor; for the stable, up-to-date release version, see interactiveDisplay.

Package for enabling powerful shiny web displays of Bioconductor objects

Bioconductor version: 3.9

The interactiveDisplay package contains the methods needed to generate interactive Shiny based display methods for Bioconductor objects.

Author: Shawn Balcome, Marc Carlson

Maintainer: Shawn Balcome <balc0022 at umn.edu>

Installation

To install this package, start R (version "3.6") and enter:

if (!requireNamespace("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("interactiveDisplay")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("interactiveDisplay")

 

PDF	R Script	interactiveDisplay: A package for enabling interactive visualization of Bioconductor objects
PDF		Reference Manual

Details

biocViews	AnnotationData, Classification, DataRepresentation, GO, GUI, GeneExpression, Genetics, Microarray, Network, QualityControl, Sequencing, Software, Visualization
Version	1.22.0
In Bioconductor since	BioC 2.13 (R-3.0) (6 years)
License	Artistic-2.0
Depends	R (>= 2.10), methods, BiocGenerics, grid
Imports	interactiveDisplayBase(>= 1.7.3), shiny, RColorBrewer, ggplot2, reshape2, plyr, gridSVG, XML, Category, AnnotationDbi
LinkingTo
Suggests	RUnit, hgu95av2.db, knitr, GenomicRanges, SummarizedExperiment, GOstats, ggbio, GO.db, Gviz, rtracklayer, metagenomeSeq, gplots, vegan, Biobase
SystemRequirements
Enhances	rstudio
URL
Depends On Me
Imports Me
Suggests Me	metagenomeSeq
Links To Me
Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	interactiveDisplay_1.22.0.tar.gz
Windows Binary	interactiveDisplay_1.22.0.zip
Mac OS X 10.11 (El Capitan)	interactiveDisplay_1.22.0.tgz
Source Repository	git clone https://git.bioconductor.org/packages/interactiveDisplay
Source Repository (Developer Access)	git clone [email protected]:packages/interactiveDisplay
Package Short Url	https://bioconductor.org/packages/interactiveDisplay/
Package Downloads Report	Download Stats