les

DOI: 10.18129/B9.bioc.les    

This package is for version 3.9 of Bioconductor; for the stable, up-to-date release version, see les.

Identifying Differential Effects in Tiling Microarray Data

Bioconductor version: 3.9

The 'les' package estimates Loci of Enhanced Significance (LES) in tiling microarray data. These are regions of regulation such as found in differential transcription, CHiP-chip, or DNA modification analysis. The package provides a universal framework suitable for identifying differential effects in tiling microarray data sets, and is independent of the underlying statistics at the level of single probes.

Author: Julian Gehring, Clemens Kreutz, Jens Timmer

Maintainer: Julian Gehring <jg-bioc at gmx.com>

Installation

To install this package, start R (version "3.6") and enter:

if (!requireNamespace("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("les")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("les")

 

PDF	R Script	Introduction to the les package: Identifying Differential Effects in Tiling Microarray Data with the Loci of Enhanced Significance Framework
PDF		Reference Manual
Text		NEWS
Text		LICENSE

Details

biocViews	ChIPchip, DNAMethylation, DifferentialExpression, Microarray, Software, Transcription
Version	1.34.0
In Bioconductor since	BioC 2.7 (R-2.12) (9 years)
License	GPL-3
Depends	R (>= 2.13.2), methods, graphics, fdrtool
Imports	boot, gplots, RColorBrewer
LinkingTo
Suggests	Biobase, limma
SystemRequirements
Enhances	parallel
URL
Depends On Me
Imports Me	GSRI
Suggests Me
Links To Me
Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	les_1.34.0.tar.gz
Windows Binary	les_1.34.0.zip
Mac OS X 10.11 (El Capitan)	les_1.34.0.tgz
Source Repository	git clone https://git.bioconductor.org/packages/les
Source Repository (Developer Access)	git clone [email protected]:packages/les
Package Short Url	https://bioconductor.org/packages/les/
Package Downloads Report	Download Stats