quantsmooth

DOI: 10.18129/B9.bioc.quantsmooth    

This package is for version 3.9 of Bioconductor; for the stable, up-to-date release version, see quantsmooth.

Quantile smoothing and genomic visualization of array data

Bioconductor version: 3.9

Implements quantile smoothing as introduced in: Quantile smoothing of array CGH data; Eilers PH, de Menezes RX; Bioinformatics. 2005 Apr 1;21(7):1146-53.

Author: Jan Oosting, Paul Eilers, Renee Menezes

Maintainer: Jan Oosting <j.oosting at lumc.nl>

Installation

To install this package, start R (version "3.6") and enter:

if (!requireNamespace("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("quantsmooth")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("quantsmooth")

 

PDF	R Script	quantsmooth
PDF		Reference Manual

Details

biocViews	CopyNumberVariation, Software, Visualization
Version	1.50.0
In Bioconductor since	BioC 1.9 (R-2.4) (13 years)
License	GPL-2
Depends	R (>= 2.10.0), quantreg, grid
Imports
LinkingTo
Suggests
SystemRequirements
Enhances
URL
Depends On Me	beadarraySNP
Imports Me	GWASTools, SIM
Suggests Me	PREDA
Links To Me
Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	quantsmooth_1.50.0.tar.gz
Windows Binary	quantsmooth_1.50.0.zip
Mac OS X 10.11 (El Capitan)	quantsmooth_1.50.0.tgz
Source Repository	git clone https://git.bioconductor.org/packages/quantsmooth
Source Repository (Developer Access)	git clone [email protected]:packages/quantsmooth
Package Short Url	https://bioconductor.org/packages/quantsmooth/
Package Downloads Report	Download Stats