rexposome

DOI: 10.18129/B9.bioc.rexposome    

This package is for version 3.9 of Bioconductor; for the stable, up-to-date release version, see rexposome.

Exposome exploration and outcome data analysis

Bioconductor version: 3.9

Package that allows to explore the exposome and to perform association analyses between exposures and health outcomes.

Author: Carles Hernandez-Ferrer [aut, cre], Juan R. Gonzalez [aut]

Maintainer: Carles Hernandez-Ferrer <carles.hernandez at isglobal.org>

Installation

To install this package, start R (version "3.6") and enter:

if (!requireNamespace("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("rexposome")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("rexposome")

 

HTML	R Script	Dealing with Multiple Imputations
HTML	R Script	Exposome Data Analysis
PDF		Reference Manual
Text		LICENSE

Details

biocViews	BiologicalQuestion, BiomedicalInformatics, Classification, Clustering, DataImport, DataRepresentation, ExperimentalDesign, Infrastructure, MultipleComparison, Software
Version	1.6.0
In Bioconductor since	BioC 3.6 (R-3.4) (2 years)
License	MIT + file LICENSE
Depends	R (>= 3.5), Biobase
Imports	methods, utils, stats, lsr, FactoMineR, stringr, circlize, corrplot, ggplot2, reshape2, pryr, S4Vectors, imputeLCMD, scatterplot3d, glmnet, gridExtra, grid, Hmisc, gplots, gtools, scales, lme4, grDevices, graphics, ggrepel, mice
LinkingTo
Suggests	mclust, flexmix, testthat, BiocStyle, knitr, rmarkdown
SystemRequirements
Enhances
URL
Depends On Me
Imports Me	omicRexposome
Suggests Me	brgedata
Links To Me
Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	rexposome_1.6.0.tar.gz
Windows Binary	rexposome_1.6.0.zip
Mac OS X 10.11 (El Capitan)	rexposome_1.6.0.tgz
Source Repository	git clone https://git.bioconductor.org/packages/rexposome
Source Repository (Developer Access)	git clone [email protected]:packages/rexposome
Package Short Url	https://bioconductor.org/packages/rexposome/
Package Downloads Report	Download Stats