tRNA

DOI: 10.18129/B9.bioc.tRNA    

This package is for version 3.9 of Bioconductor; for the stable, up-to-date release version, see tRNA.

Analyzing tRNA sequences and structures

Bioconductor version: 3.9

The tRNA package allows tRNA sequences and structures to be accessed and used for subsetting. In addition, it provides visualization tools to compare feature parameters of multiple tRNA sets and correlate them to additional data. The tRNA package uses GRanges objects as inputs requiring only few additional column data sets.

Author: Felix G.M. Ernst [aut, cre]

Maintainer: Felix G.M. Ernst <felix.gm.ernst at outlook.com>

Installation

To install this package, start R (version "3.6") and enter:

if (!requireNamespace("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("tRNA")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("tRNA")

 

HTML	R Script	tRNA
PDF		Reference Manual
Text		NEWS
Text		LICENSE

Details

biocViews	Software, Visualization
Version	1.2.2
In Bioconductor since	BioC 3.8 (R-3.5) (1 year)
License	GPL-3 + file LICENSE
Depends	R (>= 3.5), GenomicRanges, Structstrings
Imports	stringr, S4Vectors, methods, assertive, BiocGenerics, IRanges, XVector, Biostrings, Modstrings, ggplot2, scales
LinkingTo
Suggests	knitr, rmarkdown, testthat, BiocStyle, tRNAscanImport
SystemRequirements
Enhances
URL
BugReports	https://github.com/FelixErnst/tRNA/issues
Depends On Me	tRNAdbImport, tRNAscanImport
Imports Me
Suggests Me
Links To Me
Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	tRNA_1.2.2.tar.gz
Windows Binary	tRNA_1.2.2.zip (32- & 64-bit)
Mac OS X 10.11 (El Capitan)	tRNA_1.2.2.tgz
Source Repository	git clone https://git.bioconductor.org/packages/tRNA
Source Repository (Developer Access)	git clone [email protected]:packages/tRNA
Package Short Url	https://bioconductor.org/packages/tRNA/
Package Downloads Report	Download Stats