TENxBrainData

DOI: 10.18129/B9.bioc.TENxBrainData    

This package is for version 3.9 of Bioconductor; for the stable, up-to-date release version, see TENxBrainData.

Data from the 10X 1.3 Million Brain Cell Study

Bioconductor version: 3.9

Single-cell RNA-seq data for 1.3 million brain cells from E18 mice, generated by 10X Genomics.

Author: Aaron Lun [aut], Martin Morgan [aut], Bioconductor Package Maintainer [cre]

Maintainer: Bioconductor Package Maintainer <maintainer at bioconductor.org>

Citation (from within R, enter citation("TENxBrainData")):

Installation

To install this package, start R (version "3.6") and enter:

if (!requireNamespace("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("TENxBrainData")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("TENxBrainData")

 

HTML R Script Exploring the 1.3 million brain cell scRNA-seq data from 10X Genomics
PDF   Reference Manual

Details

biocViews ExperimentData, ExpressionData, RNASeqData, SequencingData, SingleCellData
Version 1.4.0
License CC BY 4.0
Depends SingleCellExperiment, HDF5Array
Imports AnnotationHub(>= 2.9.22), ExperimentHub
LinkingTo
Suggests knitr, BiocStyle, snow, BiocFileCache, BiocParallel, data.table
SystemRequirements
Enhances
URL
Depends On Me
Imports Me
Suggests Me HDF5Array, simpleSingleCell
Links To Me
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package TENxBrainData_1.4.0.tar.gz
Windows Binary
Mac OS X 10.11 (El Capitan)
Source Repository git clone https://git.bioconductor.org/packages/TENxBrainData
Source Repository (Developer Access) git clone [email protected]:packages/TENxBrainData
Package Short Url https://bioconductor.org/packages/TENxBrainData/
Package Downloads Report Download Stats

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