VariantToolsData

DOI: 10.18129/B9.bioc.VariantToolsData    

This package is for version 3.9 of Bioconductor; for the stable, up-to-date release version, see VariantToolsData.

Data for the VariantTools tutorial

Bioconductor version: 3.9

Data from the sequencing of a 50/50 mixture of HapMap trio samples NA12878 (CEU) and NA19240 (YRI), subset to the TP53 region.

Author: Michael Lawrence

Maintainer: Michael Lawrence <michafla at gene.com>

Installation

To install this package, start R (version "3.6") and enter:

if (!requireNamespace("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("VariantToolsData")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("VariantToolsData")

 

PDF	R Script	VariantTools Example Data
PDF		Reference Manual

Details

biocViews	ExperimentData, HapMap, SNPData, SequencingData
Version	1.8.0
License	Artistic-2.0
Depends	R (>= 2.10), VariantAnnotation(>= 1.7.35)
Imports	BiocGenerics, GenomicRanges
LinkingTo
Suggests	VariantTools(>= 1.3.4), gmapR(>= 1.3.3), BiocStyle
SystemRequirements
Enhances
URL
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	VariantToolsData_1.8.0.tar.gz
Windows Binary
Mac OS X 10.11 (El Capitan)
Source Repository	git clone https://git.bioconductor.org/packages/VariantToolsData
Source Repository (Developer Access)	git clone [email protected]:packages/VariantToolsData
Package Short Url	https://bioconductor.org/packages/VariantToolsData/
Package Downloads Report	Download Stats